CONCOCT ships with some additional scripts which are very useful to e.g. create input files and to extract output fastas for concoct. These scripts are:
The repository CONCOCT contains additional scripts in the
CONCOCT/scripts directory which are not fully maintained.
They implement methods that we apply after binning with CONCOCT and it might be useful as a starting point or inspiration when creating your own scripts for downstream processing of the output files.
Out of these scripts, the ones documented here are: