CONCOCT Scripts¶
CONCOCT ships with some additional scripts which are very useful to e.g. create input files and to extract output fastas for concoct. These scripts are:
cut_up_fasta.py
concoct_coverage_table.py
merge_cutup_clustering.py
extract_fasta_bins.py
The repository CONCOCT contains additional scripts in the CONCOCT/scripts
directory which are not fully maintained.
They implement methods that we apply after binning with CONCOCT and it might be useful as a starting point or inspiration when creating your own scripts for downstream processing of the output files.
Out of these scripts, the ones documented here are:
dnadiff_dist_matrix.py
extract_scg_bins.py
[Deprecated]
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